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Institute of Graduate Studies
Physics
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Physics Main Page / Program Curriculum / Biomolecular Physics

Biomolecular Physics

Course CodeSemester Course Name LE/RC/LA Course Type Language of Instruction ECTS
FBY0027 Biomolecular Physics 3/0/0 DE Türkçe 9
Course Goals

Teaching the importance of biomolecules and the relationship between the activity and biological functions of biomolecules.
Prerequisite(s) None
Corequisite(s) None…
Special Requisite(s) None
Instructor(s) Professor Sevim Akyüz
Course Assistant(s)
Schedule Friday 10.00-12.45
Office Hour(s) Thursday 15.00-16.00, 3A-16, Ofis room of Prof. Dr. Sevim Akyuz
Teaching Methods and Techniques -
Principle Sources -
Other Sources -
Course Schedules
Week Contents Learning Methods
1. Week Basic structure of living systems. Biomolecules Online presentations, simulations and discussions
2. Week Aminoacids, formation of peptide bonds, and primary structure of proteins. Online presentations, simulations and discussions
3. Week Secondary, Tertiary and Quaternary structures of proteins Online presentations, simulations and discussions
4. Week Ramachandran map and conformational analysis of biomolecules Online presentations, simulations and discussions
5. Week Conformational analysis methods Online presentations, simulations and discussions
6. Week Applications of the conformational analysis Online presentations, simulations and discussions
7. Week Function-structure relationship of biomolecules Online presentations, simulations and discussions
8. Week Structure of human cell, lipids, integral and channel proteins Online presentations, simulations and discussions
9. Week Cell membrane permeability, Molecular interactions at membrane gates Online presentations, simulations and discussions
10. Week Cell contents and cellular respiration Online presentations, simulations and discussions
11. Week Electrical circuit modeling of cell membranes Online presentations, simulations and discussions
12. Week Biological work and mechanical work in living systems Online presentations, simulations and discussions
13. Week Mechanical properties of muscles Online presentations, simulations and discussions
14. Week Physics and modeling of muscle contraction Online presentations, simulations and discussions
15. Week Final examinations face to face
16. Week
17. Week
Assessments
Evaluation tools Quantity Weight(%)
Final Exam 1 100


Program Outcomes
PO-1To acquire the ability of deeply understanding physical concepts, by extending knowledge and experience in physics.
PO-2To be able to understand, interpret, and synthesise interdisciplinary relations.
PO-3To be able to transfer field-specific information to other work groups in written, oral, and visual ways.
PO-4To be able to identify and evaluate problems relevant to the mastering field, by using various databases and bibliographic resources.
PO-5To be able to use the theoretical and applied information which is learned within the mastering field, with the help of information technologies.
PO-6To understand the fundamentals of physics in an advanced way and to acquire the ability of problem solving.
PO-7To adopt acting in accordance with scientific ethics.
PO-8To acquire the ability of reading and writing in at least one foreign language.
PO-9To be able to follow recent developments in the mastering field of physics, by making extensive scans of the literature.
PO-10To be able to develop individual decision and creativity skills.
Learning Outcomes
LO-1Student learns biomolecules and their molecular structures
LO-2Gain knowledge about amino acids, formation of peptide bonds and primary structures of proteins
LO-3Learns the secondary, tertiary and quaternary structures of proteins; Examines the relationship between biological activity and three-dimensional structure
LO-4Learns the structure of cell membranes, investigates the similarity of cell membranes to electronic circuits.
LO-5Learns the cell and cell membrane contents. Gains knowledge about the membrane transport mechanism.
LO-6Learns to determine the three-dimensional structures of proteins. Gains knowledge of Ramachandran maps.
LO-7Gains knowledge about the molecular mechanism of mechanical work in living things.
Course Assessment Matrix:
Program Outcomes - Learning Outcomes Matrix
 PO 1PO 2PO 3PO 4PO 5PO 6PO 7PO 8PO 9PO 10
LO 1
LO 2
LO 3
LO 4
LO 5
LO 6
LO 7